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raman

By raman
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raman Regular Member

raman

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I have a PHP script with HTML embedded in it.

 

The PHP script takes time to run, so I want to add an intermediate page which would should show a progress bar and a message of my choice. Can someone tell how I can do this ?

Will it be done by Javascript or PHP and where to add the code for the progress bar.

 

 

Here is my PHP code:






<html>

<head><link href="lipo.css" rel="stylesheet" type="text/css" media="all"><script type="text/javascript" src="selctall.jsp">


</script></head>

<body>

<br>

<table align="center" bgcolor="skyblue" width="60%"><tr>

              

                <th align="left">    <img src="calycin2.gif" height="130"></img>       &nbsp&nbsp   &nbsp&nbsp    &nbsp&nbsp    &nbsp&nbsp <img src="banner.jpg" height="130"></img>       &nbsp&nbsp    &nbsp&nbsp    &nbsp&nbsp   <img src="icgeb_logo1.jpg" height="130"></img></th></tr></table><table align="left" height="50%"><tr><td> </td></tr><tr><td> </td></tr><tr><td>

<div id="main">	

      <div class="leftnav">


	<ul class="listnone">


				<li class="first"><a href="lipohome.html">Home</a></li>

				<li><a href="submit.html">Submit</a></li>

				<li><a href="algorithm.html">Algorithm</a></li>

																																																					                           <li><a href="blast/viroblast.php">BLAST search</a></li>																																     

				<li><a href="help.html">Help</a></li>

				<li><a href="team.html">Team</a></li> 


			</ul></div></div>




</td></tr></table><br>


<DIV STYLE="position:absolute; left:330px; width:200px; height:25px">

<CENTER><FONT SIZE="+2" COLOR="00ff00"></FONT></CENTER>



<!-----------------------------PHP script --------------------!>


<?php

echo "<table align='left' width=650 frame='void' cellspacing=1 cellpadding=3 border=0>";

echo "<tr><td height =20></td></tr>";

########################### Setting Veriables ##############################

$randi=rand(0, 1111111);


$seq=$_POST['seq'];

$userfile=$_FILES['userfile']['tmp_name'];

$hybpred=$_POST['hybpred'];

$sscpred=$_POST['sscpred'];

$pfams=$_POST['pfam'];

$pthresh=$_POST['pthresh'];

$sscthresh=$_POST['sscthresh'];

$hybthresh=$_POST['hybthresh'];


$seqfile= $randi;



########################### Writing Input Seq into file #########################



$pattern = '/>/';


  if (preg_match($pattern,$seq))

    {

      $somecontent=$seq;

    }

  else

    {

      $somecontent = ">sequence\n".$seq;

    }


$freq=0;

// Let's make sure the file exists and is writable first.

if (!is_writable("$seqfile")) 

{

  if (!$handle = fopen("./junkbin/$seqfile", 'w'))

    {

      echo "Cannot open file ($seqfile)";

      exit;

    }

  

  // Write $somecontent to our opened file.

  if (fwrite($handle, $somecontent) === FALSE) 

    {

      ++$freq;

      //echo "Cannot write to file ($seqfile)";

      exit;

    }

  

  //echo "Success, wrote ($somecontent) to file ($seqfile)";

  

  fclose($handle);

}


######################## get_svm_results() function call in IF-ESLE #################################


if($seq == '' && $userfile == ''){

  echo "<TR><TD><font color='#d11010' size=5><br><p align='center'><blink><b>Warning !</b> </blink><br> Please type/paste either sequence/sequences or upload a sequence file from the browser!!</font></p></TD></TR> ";


}elseif($seq == ''){

  $file_data= implode("",file($userfile));

  $sqfile="junkbin/".$randi;

  $f=fopen("$sqfile","w");

  fwrite($f,$file_data);

  fclose($f);

  

  echo "<TR><TD bgcolor='skyblue' width='100%' Align=middle colspan='3'><font size =5.5 color ='AF250A'><b>PREDICTION RESULT<TD></TR><TR><TD><BR></TD></TR>";

  echo "<TR><TD width=30%><font size=4><b>Your Job ID is </TD><TD width=5%>:</TD><TD>$randi</TD></TR>";

  

  get_svm_result($randi,$sqfile,$sscthresh,$hybthresh,$pthresh,$hybpred,$sscpred,$pfam);


}elseif($userfile == ''){

    $sqfile= "junkbin/"."$seqfile";

    echo "<TR ><TD bgcolor='skyblue' width='100%' Align=middle colspan='3'><font size =5.5 color='AF250A'><b>PREDICTION RESULT<TD></TR><TR><TD><BR></TD></TR>";    echo "<TR ><TD width=30%><font size=4><b>Your Job ID is </TD><TD width=5%>:</TD><TD>$randi</TD></TR>";

  

    get_svm_result($randi,$sqfile,$sscthresh,$hybthresh,$pthresh,$hybpred,$sscpred,$pfam);

   

   }else{


           echo "<TR><TD><font color='#d11010' size=4><br><br><br><img src='e001.gif'> <blink><br><br><font color='#d11010' size=5>Error !!</blink> either upload file from browser or type/paste your sequence in Text area !</font></TD></TR>";


        }





########################  FUNCTION get_svm_result()  #################################




function get_svm_result($randi,$sqfile,$sscthresh,$hybthresh,$pthresh,$hybpred,$sscpred){



#====================== Executing system commands ======================#

  

  


  $sqfile="junkbin/".$randi;

  $outfile="outputs/".'scores'.$randi;



  $testDetails_out=$randi.'testDetails.out';$testDetails1_out=$randi.'testDetails1.out';

  $outfilecp='outfile'.$randi.'cp';

  $outfilecp1='outfile1'.$randi.'cp';

  $hybmodelfile="finl_models/".'pssm-ssc-model';

  $modelfile = "finl_models/".'ssc-model';

  

  $scorefile=$randi.'hybscore';

  $sscscore=$randi.'sscscore';

  $outfile2= 'allseqssc_'.$randi;

  $outfilea='finlf'.$randi;

  $outfile3='finlflll'.$randi;

  $outfile4='svmpat1_'.$randi;

  $outfile5='ps-ssc'.$randi;

  system("cat prefile $seqfile endfile > $yrfile");

  echo "<TR><TD width=30%><font size=4><b>Your input seq(s)  </TD><TD width=5%>:</TD><TD><a href='$sqfile'>Input file</a></TD>";

  

  $myinput='4pssm'.$randi;

  system("cp $sqfile /usr/local/apache2/htdocs/lipocalinpred/$myinput");

  



  if(!empty($hybpred) || (!empty($sscpred))){

  

   system("sh fasta.sh $myinput");

  

   system("perl lipopred.pl $myinput $randi");


  }

  

  if(!empty($hybpred)){

    system("perl ssc-normon.pl $outfile2 $randi");

    system("paste -d '' $outfile4 $outfilea > $outfile5");


    system("./svm_classify $outfile5 $hybmodelfile $scorefile >> $testDetails_out");

    system("perl threshold_check.pl $scorefile $hybthresh > outputs/$outfilecp");

  }

  if(!empty($sscpred)){

    system("perl ssc-norm.pl $outfile2 $randi");

    system("./svm_classify $outfile3 $modelfile $sscscore >> $testDetails1_out");

    system("perl threshold_check.pl $sscscore $sscthresh > outputs/$outfilecp1");

  }

      

     

  

#############################################################################

  $sno=$randi.'sno';

  $tmpid=$randi.'tmpid';

  $seqid=$randi.'seqid';



  $download=$randi.'downld';



  system("cat $sqfile |grep '>' |nl> outputs/$seqid");

  `perl -pi -e "s/\>//g" outputs/$seqid`;

  `perl -pi -e "s/^ +//" outputs/$seqid`;

  `perl -pi -e "s/ /\t/" outputs/$seqid`;

  `cut -f 1 outputs/$seqid >outputs/$sno`;

  `cut -f 2 outputs/$seqid >outputs/$tmpid`;

  `perl -pi -e "s/\cM//g" outputs/$seqid`;

  

#  `paste outputs/$seqid outfile outputs/$outfilecp > outputs/$download`;



  

  

  

  echo "<TR><TD colspan=3><font size=3 color='red'><b><i>Note: </font><font size=3>Higher the SVM score, better is the confidence level of prediction. The confidence can also be taken care by using a high value of 'threshold' at submission page.</b></i></font><br><br></TD>";

  

  

 #     echo "<TR><TD align=center colspan=3><a href=outputs/$download><p align='right'>Download result</a></p>";

      

      echo "<TABLE width='80%' bgcolor='pink' border='1' text='F5F4B1'></tr>";

      


      echo "<tr bgcolor='B70B4D'><td width=20% align=middle><font color ='F6F8CC'><b>S.No.</td><td width=50% align=middle><font color ='F6F8CC'><b>Sequence IDs</td><td width=40% align=middle><font color ='F5F4B1'><b>SVM Score</td><td width=60% align=middle><font color ='F5F4B1'><b>Decision</td></font></tr>";

   


      if(!empty($hybpred)){

      echo"<tr><td width='50%'><font size=4 color=blue>PSSM+SSC model</font></td></tr>";

       echo "<tr bgcolor='#FFFFFF' onMouseOver=\"bgr_color(this,'lightyellow')\" onMouseOut=\"bgr_color(this,'#FFFFFF')\">";

      echo "<td width=20% align=left>";

      system("cat prefile outputs/$sno endfile");

      echo "</td><td width=50% align=left>";

      system("cat prefile outputs/$tmpid endfile");

      echo "</td><td width=40% align=middle>";

      system("cat prefile $scorefile endfile");


      echo "</td><td width=40% align=middle>";

      system("cat prefile outputs/$outfilecp endfile");

      echo"</td></tr>";

    }

      if(isset($sscpred)){

      echo"<tr><td width='50%'><font size=4 color=blue>SSC model</font></td></tr>";

      echo "<tr bgcolor='#FFFFFF' onMouseOver=\"bgr_color(this,'lightyellow')\" onMouseOut=\"bgr_color(this,'#FFFFFF')\">";

      echo "<td width=20% align=left>";

      system("cat prefile outputs/$sno endfile");

      echo "</td><td width=50% align=left>";

      system("cat prefile outputs/$tmpid endfile");

      echo "</td><td width=40% align=middle>";

      system("cat prefile $sscscore endfile");


      echo "</td><td width=40% align=middle>";

      system("cat prefile outputs/$outfilecp1 endfile");

      echo"</td></tr>";

    }

    


      echo "<tr><td width=40% align=middle>";

  

  

      echo "</td></tr></TABLE>";



  echo "</DIV></html>";

}


?>









 


 


 



			
		


		
			

				
					
						

	
	
		

			
				
				

					
				

			
			
			
		

	


					
				
				
			

		

		
	


	

	





	
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