vidyashankara Posted May 16, 2006 Share Posted May 16, 2006 I have a text file named 123.pdb. It contains[code]HEADER LIPID TRANSPORT 23-SEP-97 1AV1 TITLE CRYSTAL STRUCTURE OF HUMAN APOLIPOPROTEIN A-I COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN A-I; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LIPID-BINDING DOMAIN; COMPND 5 SYNONYM: APO A-I; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: N-TERMINAL MET, DEL(1-43) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 TISSUE: BLOOD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEMEX KEYWDS LIPOPROTEIN, LIPID TRANSPORT, CHOLESTEROL METABOLISM, KEYWDS 2 ATHEROSCLEROSIS, HDL, LCAT-ACTIVATION EXPDTA X-RAY DIFFRACTION [/code]I am writing a code to read this file and echo the output. Like.[code]Description:Name: CRYSTAL STRUCTURE OF HUMAN APOLIPOPROTEIN A-IPDB ID : 1av1Number of Chains: A, B, C, D;Experimental Method: X-RAY DIFFRACTION [/code]I have the following code.[code]$id = $_GET["file"];$file = "$id.pdb";$contents = file_get_contents($file);$title= preg_replace('/^(?!TITLE).*?(?:\n|$)/m','',$contents);$exp= preg_replace('/^(?!EXPDTA).*?(?:\n|$)/m','',$contents);$chain= preg_replace('/^(?!COMPND 3 CHAIN:).*?(?:\n|$)/m','',$contents);echo "Description:<p>";echo "Name: $title<br>";echo "PDB ID : $id<br>";echo "Number of Chains: $chain<br>";echo "Experimental Method:$exp<br>";[/code]This outputs [code]Description:Name: TITLE CRYSTAL STRUCTURE OF HUMAN APOLIPOPROTEIN A-IPDB ID : 1av1Number of Chains: COMPND 3 CHAIN: A, B, C, D;Experimental Method:EXPDTA X-RAY DIFFRACTION [/code]Basically the script reads the line starting with TITLE, COMPND 3 CHAIN and EXPDTA to get this information. what do i modify in the script to omit these words? the script should just show Name: CRYSTAL STRUCTURE OF HUMAN APOLIPOPROTEIN A-Iinstead of Name: TITLE CRYSTAL STRUCTURE OF HUMAN APOLIPOPROTEIN A-IThe starting word TITLE should be omitted.If i sayREAD from 123.pdb. The lines starting from TITLE, It must output what comes after TITLE, not the whole line. Any help would be appreciated!ThanksVidyashankara Quote Link to comment Share on other sites More sharing options...
vidyashankara Posted May 16, 2006 Author Share Posted May 16, 2006 I got it, just replaced the text with a space :) Quote Link to comment Share on other sites More sharing options...
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